Basic Information
Locus ID:
SOLCI006465400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7111 | 10432 | 14093 | + | SOLCI006465400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 117,845.09 Da | 44.81 | 108.52 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 100 | 159 | 1.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 71 | 9.6E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 388 | 448 | 1.2E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 783 | 1050 | 1.0E-45 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 533 | 555 | 0.031 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 770 | 1054 | 2.43E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 360 | 697 | 1.67E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 398 | 1.5E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 477 | 571 | 1.6E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 381 | 476 | 3.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 572 | 699 | 1.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 186 | 6.6E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 284 | 380 | 5.0E-29 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 859 | 1069 | 5.5E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 283 | 3.7E-24 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 761 | 858 | 1.5E-22 | - |
| SMART | SM00369 | LRR_typ_2 | 411 | 435 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 170 | 194 | 39.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 781 | 1057 | 5.8E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 531 | 554 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 121 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 122 | 145 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 579 | 603 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 483 | 506 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 169 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 363 | 120.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 781 | 1071 | 37.346989 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 787 | 810 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 901 | 913 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 579 | 592 | 3.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 414 | 427 | 3.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34110.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_015060633.1 | probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Solanum pennellii] | 0 |
| C0LGF5 | LRR receptor-like serine/threonine-protein kinase RGI5 OS=Arabidopsis thaliana OX=3702 GN=RGI5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2ATR4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022485 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg22586, jg6063 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22819 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah024606, Ah024607, Ah024608 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g012310, BVRB_2g039850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39288, Sbi_jg54613 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11138 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015595 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014975, gene:ENSEOMG00000035211 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0015430, CQ.Regalona.r1.1BG0010500 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283250 |
| Apiaceae | Apium graveolens | 1 | Ag7G02166 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G000350, COCNU_02G000360, COCNU_03G015900 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704885, gene-LOC103709763 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2245.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G17080 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g036150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1485 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1622 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1834, nbisL1-mrna-1835 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1605 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023114 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543790, gene-QOZ80_6BG0497170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0715220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034808, gene-QYE76_034809 |
| Poaceae | Oryza coarctata | 2 | Oco11G011880, Oco12G012050 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g38990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G176900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302878, Pt_Chr0400576 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029450, Chr05G007150, Chr10G017210, Chr11G005280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G608900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG051420, gene_TRIDC7BG042490 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G368200.1, TraesCS7B02G260400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb386160_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41122 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30752, Zma_g32997 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1262, evm.TU.Scaffold_8_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18556, nbisL1-mrna-9826 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13443, nbisL1-mrna-2278 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13233, nbisL1-mrna-18023 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.131, add.evm.TU.utg000018l.277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18026 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11196 |
| Salicaceae | Populus euphratica | 2 | populus_peu14929, populus_peu32604 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601794, gene-LOC132627391 |
| Solanaceae | Solanum chilense | 2 | SOLCI005251400, SOLCI006465400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006634, gene-LOC107016180 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15154 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1717 |