Basic Information
Locus ID:
SOLCI006443100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold7074 | 2638 | 6010 | - | SOLCI006443100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 37,812.28 Da | 47.95 | 91.36 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 34 | 82 | 1.4793E-15 | - |
| Pfam | PF12906 | RING-variant domain | 34 | 81 | 3.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 86 | 6.36E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 87 | 1.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 33 | 82 | 1.1E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 26 | 88 | 20.020283 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004239998.1 | uncharacterized protein LOC101249644 [Solanum lycopersicum] | 0 |
| O60103 | ERAD-associated E3 ubiquitin-protein ligase doa10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=doa10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2ATV4 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022412 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology