Basic Information
Locus ID:
SOLCI006368600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6944 | 6908 | 7486 | - | SOLCI006368600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 21,928.84 Da | 51.80 | 75.68 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 36 | 88 | 1.70831E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 38 | 86 | 1.1E-7 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 104 | 9.15E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 132 | 3.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 38 | 86 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 38 | 87 | 12.445019 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 53 | 62 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | NP_001352941.1 | RING-finger E3 ubiquitin ligase Makibishi 1 [Solanum lycopersicum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AU67 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_022193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology