Basic Information
Locus ID:
SOLCI006342800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6903 | 16779 | 17507 | - | SOLCI006342800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 27,136.69 Da | 74.30 | 74.92 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 35 | 87 | 8.49326E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 37 | 85 | 2.8E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 98 | 4.16E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 107 | 3.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 85 | 5.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 86 | 12.69582 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 52 | 61 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_010323737.2 | E3 ubiquitin-protein ligase RMA1H1 [Solanum lycopersicum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AWL4 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_022142 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology