Basic Information
Locus ID:
SOLCI006336000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6892 | 9463 | 16672 | + | SOLCI006336000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 132,143.66 Da | 44.43 | 80.72 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 996 | 1032 | 7.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 558 | 592 | 0.0087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 853 | 1177 | 1.51E-31 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 466 | 1037 | 2.12E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 621 | 797 | 1.9E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 843 | 1189 | 7.8E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 346 | 618 | 1.4E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 595 | 636 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 725 | 150.0 | IPR001680 |
| SMART | SM00668 | ctlh | 33 | 91 | 1.3E-7 | IPR006595 |
| SMART | SM00667 | Lish | 3 | 35 | 1.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 993 | 1032 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 592 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1086 | 1125 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 544 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 639 | 682 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 950 | 990 | 1.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1000 | 1032 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 91 | 11.007933 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 9.917482 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 601 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1000 | 1032 | 11.260138 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 579 | 593 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 337 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_010324827.1 | topless-related protein 1-like isoform X18 [Solanum lycopersicum] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2AW73 | WD_REPEATS_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022129 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology