Basic Information
Locus ID:
SOLCI006278400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6801 | 18078 | 19170 | - | SOLCI006278400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 38,385.04 Da | 70.17 | 71.50 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 227 | 269 | 4.76285E-23 | - |
| Pfam | PF13639 | Ring finger domain | 227 | 269 | 1.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 16 | 49 | 2.4E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 275 | 2.83E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 275 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 228 | 268 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 269 | 12.238477 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015057874.1 | E3 ubiquitin-protein ligase RZF1-like [Solanum pennellii] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AWW8 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_021951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology