Basic Information
Locus ID:
SOLCI006256100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold677 | 257710 | 259610 | + | SOLCI006256100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 65,733.59 Da | 40.66 | 97.95 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 47 | 80 | 3.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 79 | 3.27E-9 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 108 | 415 | 2.45E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 108 | 400 | 1.3E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 83 | 9.4E-8 | - |
| SMART | SM00256 | fbox_2 | 50 | 91 | 0.0099 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 44 | 78 | 9.788908 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015067954.1 | uncharacterized protein LOC107012592 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2CBZ9 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_021879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003914 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633328 |
| Solanaceae | Solanum chilense | 2 | SOLCI004334800, SOLCI006256100 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107012592, gene-LOC107013651, gene-LOC107013656 ... |