Basic Information
Locus ID:
SOLCI006224600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold672 | 68383 | 94488 | - | SOLCI006224600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 197,778.95 Da | 48.54 | 73.90 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1501 | 1764 | 2.14439E-147 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 376 | 648 | 1.60154E-134 | - |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 395 | 644 | 3.2E-34 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1540 | 1707 | 2.3E-34 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 35 | 104 | 6.9E-17 | IPR000306 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 109 | 3.6E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 442 | 614 | 3.56E-43 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1495 | 1764 | 2.16E-78 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1460 | 1621 | 1.3E-35 | IPR027484 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 110 | 2.1E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 441 | 614 | 1.3E-54 | IPR027409 |
| Gene3D | G3DSA:3.30.810.10 | - | 1623 | 1765 | 4.6E-42 | - |
| SMART | SM00330 | PIPK_2 | 1474 | 1765 | 9.0E-126 | IPR002498 |
| SMART | SM00064 | fyve_4 | 30 | 105 | 1.1E-19 | IPR000306 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1440 | 1764 | 56.901688 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 104 | 12.842994 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1454 | 1476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1165 | - | - |
| Coils | Coil | Coil | 1084 | 1104 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_015081902.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Solanum pennellii] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CBQ8 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Solanum chilense OX=4083 GN=EJD97_021769 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology