Basic Information
Locus ID:
SOLCI006174100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the glycosyl hydrolase 28 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6630 | 14651 | 17484 | - | SOLCI006174100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 53,127.59 Da | 52.49 | 81.62 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 130 | 444 | 2.6E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 94 | 487 | 1.57E-121 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 88 | 479 | 1.9E-114 | IPR012334 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 81 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_015074404.1 | polygalacturonase At1g48100 [Solanum pennellii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AV59 | Polygalacturonase OS=Solanum chilense OX=4083 GN=EJD97_021601 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology