Basic Information
Locus ID:
SOLCI006162000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6610 | 11830 | 14027 | - | SOLCI006162000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 23,448.40 Da | 35.56 | 62.63 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 139 | 187 | 7.3E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 21 | 132 | 1.1E-19 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 129 | 194 | 2.06E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 198 | 5.2E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 132 | 1.2E-27 | IPR043151 |
| SMART | SM00249 | PHD_3 | 139 | 186 | 3.0E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 20 | 135 | 1.1E-30 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 20 | 135 | 21.202581 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 137 | 188 | 9.0984 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 140 | 185 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_015065287.1 | chromatin remodeling protein EBS-like [Solanum pennellii] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AX81 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_021582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology