Basic Information
Locus ID:
SOLCI006143700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6588 | 5784 | 10971 | + | SOLCI006143700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 35,881.47 Da | 45.00 | 70.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 53 | 91 | 1.47356E-14 | - |
| CDD | cd03829 | Sina | 169 | 297 | 3.97669E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 97 | 296 | 8.7E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 111 | 299 | 3.99E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 95 | 3.53E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 107 | 1.0E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 163 | 1.3E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 296 | 9.6E-38 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 108 | 168 | 14.202578 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 91 | 9.435407 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_015089149.1 | E3 ubiquitin-protein ligase SINAT5-like isoform X2 [Solanum pennellii] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AVG9 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_021516 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology