Basic Information
Locus ID:
SOLCI006140500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6580 | 36478 | 40372 | + | SOLCI006140500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 66,344.65 Da | 38.51 | 86.89 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 84 | 130 | 4.7E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 25 | 64 | 1.6E-21 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 41 | 566 | 3.66E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 64 | 589 | 2.5E-168 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 63 | 1.5E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 474 | 498 | 630.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 355 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 122 | 146 | 86.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 450 | 473 | 19.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 27 | 68 | 0.001 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_004232795.1 | protein AUXIN SIGNALING F-BOX 2 [Solanum lycopersicum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2AZ66 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_021504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology