Basic Information
Locus ID:
SOLCI006056800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6439 | 2281 | 6191 | + | SOLCI006056800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 41,309.02 Da | 45.72 | 78.59 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03114 | BAR domain | 51 | 257 | 8.0E-8 | IPR004148 |
| Pfam | PF14604 | Variant SH3 domain | 308 | 356 | 2.8E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 46 | 257 | 8.22E-24 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 267 | 358 | 2.1E-15 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 293 | 367 | 1.2E-14 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 39 | 262 | 1.9E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 304 | 359 | 3.6E-11 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 301 | 360 | 17.643692 | IPR001452 |
| Coils | Coil | Coil | 243 | 263 | - | - |
| Coils | Coil | Coil | 192 | 212 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_004243144.1 | SH3 domain-containing protein 2 [Solanum lycopersicum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AZL6 | SH3 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_021305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology