Basic Information
Locus ID:
SOLCI006022200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6378 | 18951 | 20462 | - | SOLCI006022200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 47,249.91 Da | 43.77 | 106.29 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 57 | 6.36213E-17 | - |
| Pfam | PF04564 | U-box domain | 6 | 83 | 1.3E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 88 | 6.36E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 165 | 397 | 3.96E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 78 | 3.4E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 79 | 408 | 7.3E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 79 | 1.5E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 86 | 23.30134 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_004228871.1 | E3 ubiquitin-protein ligase PUB23-like [Solanum lycopersicum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AXS5 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_021221 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology