Basic Information
Locus ID:
SOLCI005962200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6277 | 43625 | 44833 | + | SOLCI005962200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 46,493.26 Da | 39.44 | 84.35 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 75 | 3.1E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 248 | 360 | 4.4E-9 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 94 | 9.81E-9 | IPR036047 |
| SMART | SM00256 | fbox_2 | 39 | 79 | 2.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 140 | 376 | 9.6E-32 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17780.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015087535.1 | putative F-box protein At1g19160 isoform X1 [Solanum pennellii] | 0 |
| Q3E9Z8 | Putative F-box protein At4g17780 OS=Arabidopsis thaliana OX=3702 GN=At4g17780 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6N2AYB0 | F-box domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_021042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10001 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17883, Sbi_jg62512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1088 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007155 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59201 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001810, CQ.Regalona.r1.4BG0001880 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005517 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.674 |
| Solanaceae | Solanum chilense | 1 | SOLCI005962200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030802 |