Basic Information
Locus ID:
SOLCI005917200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6197 | 34060 | 35667 | + | SOLCI005917200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 61,140.64 Da | 49.99 | 65.31 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 253 | 296 | 2.2E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 193 | 227 | 2.4E-6 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 491 | 515 | 2.59E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 201 | 5.3E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 302 | 4.12E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 202 | 8.7E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 233 | 478 | 5.0E-69 | - |
| SMART | SM00647 | ibrneu5 | 192 | 303 | 3.7E-8 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 118 | 307 | 28.936605 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 496 | 515 | - | IPR001876 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015072355.1 | probable E3 ubiquitin-protein ligase ARI8 [Solanum pennellii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AYF4 | RBR-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_020929 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629189 |
| Solanaceae | Solanum chilense | 1 | SOLCI005917200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016385 |