Basic Information
Locus ID:
SOLCI005910900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold6189 | 3274 | 7038 | + | SOLCI005910900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 35,727.36 Da | 47.03 | 69.42 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 49 | 87 | 2.91928E-14 | - |
| CDD | cd03829 | Sina | 165 | 293 | 2.49084E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 93 | 292 | 1.0E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 90 | 1.21E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 104 | 296 | 1.18E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 103 | 8.9E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 159 | 1.4E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 160 | 292 | 1.6E-38 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 104 | 164 | 14.304968 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 51 | 87 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_004234967.1 | E3 ubiquitin-protein ligase SINAT3 [Solanum lycopersicum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AW95 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_020904 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology