Basic Information
Locus ID:
SOLCI005823900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold603 | 205471 | 208786 | - | SOLCI005823900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 120,142.57 Da | 35.15 | 100.12 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 741 | 1015 | 2.9E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 144 | 203 | 8.7E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 336 | 395 | 1.6E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 81 | 117 | 4.8E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 733 | 1017 | 1.13E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 440 | 656 | 1.84E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 99 | 424 | 1.7E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 438 | 670 | 1.1E-59 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 263 | 437 | 2.2E-45 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 721 | 818 | 1.7E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 79 | 255 | 4.7E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 819 | 1030 | 7.4E-61 | - |
| SMART | SM00220 | serkin_6 | 739 | 1021 | 6.2E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 739 | 1021 | 37.021904 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 745 | 768 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 868 | 880 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_015084436.1 | receptor-like protein kinase HSL1 [Solanum pennellii] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C7M7 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_020603 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology