Basic Information
Locus ID:
SOLCI005823800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Poly(A) polymerase predicted RNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold603 | 193461 | 204047 | + | SOLCI005823800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 88,437.02 Da | 52.53 | 81.46 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 65 | 220 | 1.26932E-27 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 373 | 429 | 2.0E-11 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 99 | 175 | 3.2E-9 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 26 | 369 | 1.2E-111 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 438 | 506 | 2.0E-5 | IPR007010 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 221 | 369 | 5.76E-63 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 22 | 219 | 7.09E-52 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 373 | 499 | 8.04E-36 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 58 | 214 | 2.2E-158 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 373 | 488 | 6.0E-26 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 26 | 368 | 2.2E-158 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 540 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_004245142.1 | nuclear poly(A) polymerase 4-like isoform X3 [Solanum lycopersicum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C8F2 | polynucleotide adenylyltransferase OS=Solanum chilense OX=4083 GN=EJD97_020602 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology