Basic Information
Locus ID:
SOLCI005817800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold602 | 28224 | 66601 | + | SOLCI005817800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 416,777.66 Da | 43.12 | 89.28 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 2705 | 2873 | 4.1E-9 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1618 | 1759 | 7.2E-10 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 16 | 186 | 2.1E-19 | IPR031642 |
| Pfam | PF00169 | PH domain | 208 | 315 | 1.7E-9 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1395 | 1531 | 5.8E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 3565 | 3684 | 1.9E-5 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2068 | 2166 | 7.41E-5 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 202 | 318 | 5.73E-12 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 202 | 322 | 9.1E-9 | IPR011993 |
| SMART | SM00233 | PH_update | 206 | 318 | 1.5E-9 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 205 | 316 | 11.0088 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1586 | 1610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 947 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_015084887.1 | uncharacterized protein LOC107028368 [Solanum pennellii] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CAP2 | PH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_020566 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology