Basic Information
Locus ID:
SOLCI005817700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Vacuolar sorting-associated protein 13, N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold602 | 14175 | 24920 | + | SOLCI005817700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 74,347.91 Da | 37.46 | 91.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16910 | Repeating coiled region of VPS13 | 560 | 613 | 1.1E-6 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 373 | 2.9E-68 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 9.2E-31 | IPR026854 |
| Coils | Coil | Coil | 111 | 131 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.1 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_010325532.1 | uncharacterized protein LOC101254928 isoform X1 [Solanum lycopersicum] | 0 |
| Q7Z7G8 | Intermembrane lipid transfer protein VPS13B OS=Homo sapiens OX=9606 GN=VPS13B PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2CCW1 | PH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_020565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology