Basic Information
Locus ID:
SOLCI005761200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5925 | 746 | 4051 | + | SOLCI005761200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 11,905.23 Da | 46.73 | 52.95 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 92 | 1.91902E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 21 | 91 | 3.1E-24 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 96 | 4.55E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 19 | 98 | 9.6E-38 | - |
| SMART | SM00213 | ubq_7 | 21 | 92 | 3.8E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 19 | 96 | 15.775487 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_015086189.1 | small ubiquitin-related modifier 1-like [Solanum pennellii] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2AZK0 | Small ubiquitin-related modifier OS=Solanum chilense OX=4083 GN=EJD97_020411 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology