HalophFGD

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Basic Information
Locus ID: SOLCI005741500
Species & Taxonomic ID: Solanum chilense & 4083
Genome Assembly: GCA_006013705.1
Description: Conserved gene of
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold59 172262 172591 - SOLCI005741500
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.73 13,223.72 Da 64.45 71.73 -0.97
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF06839 GRF zinc finger 13 54 7.1E-8 IPR010666
Coils Coil Coil 72 92 - -
Gene Ontology
Molecular Function:
GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_027770284.1 uncharacterized protein LOC114076072 [Solanum pennellii] 0
TrEMBL A0A6N2CKG4 zf-GRF domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_020346 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Solanaceae Lycium barbarum 6 gene-LOC132602543, gene-LOC132613424, gene-LOC132619278 ...
gene-LOC132629411, gene-LOC132634081, gene-LOC132638386
Solanaceae Solanum chilense 2 SOLCI000728800, SOLCI005741500
Solanaceae Solanum pennellii 10 gene-LOC107028148, gene-LOC114075058, gene-LOC114076072 ...
gene-LOC114076117, gene-LOC114076837, gene-LOC114076875, gene-LOC114077166, gene-LOC114077323, gene-LOC114078021, gene-LOC114078671
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.