Basic Information
Locus ID:
SOLCI005738900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5896 | 1028 | 1717 | + | SOLCI005738900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 26,163.40 Da | 58.85 | 80.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 42 | 93 | 3.01033E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 44 | 92 | 1.2E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 106 | 1.37E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 118 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 92 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 93 | 12.754832 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_004251789.1 | E3 ubiquitin-protein ligase RMA1H1-like [Solanum lycopersicum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AZQ7 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_020332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology