Basic Information
Locus ID:
SOLCI005676900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5792 | 8932 | 11773 | - | SOLCI005676900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 26,490.75 Da | 37.64 | 95.38 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 16 | 96 | 7.50624E-51 | - |
| Pfam | PF07650 | KH domain | 21 | 94 | 4.7E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 107 | 189 | 6.5E-25 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 94 | 192 | 3.27E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 11 | 100 | 1.34E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 93 | 6.5E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 94 | 220 | 8.7E-67 | IPR036419 |
| SMART | SM00322 | kh_6 | 43 | 112 | 0.0073 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 9 | 211 | 4.3E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 22 | 93 | 11.351615 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 148 | 184 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_004245054.1 | 40S ribosomal protein S3-3-like [Solanum lycopersicum] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AZS0 | 30S ribosomal protein S3, chloroplastic OS=Solanum chilense OX=4083 GN=EJD97_020145 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology