Basic Information
Locus ID:
SOLCI005664000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5770 | 2502 | 12529 | - | SOLCI005664000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 90,394.05 Da | 50.48 | 82.50 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 144 | 361 | 6.1E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 696 | 735 | 5.1E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 675 | 736 | 1.03E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 388 | 2.12E-18 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 673 | 742 | 3.1E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 131 | 402 | 8.1E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 196 | 372 | 4.1E-14 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 673 | 737 | 4.5E-7 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 137 | 385 | 16.42305 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 672 | 738 | 11.868275 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 539 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_004246330.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Solanum lycopersicum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2B068 | protein-serine/threonine phosphatase OS=Solanum chilense OX=4083 GN=EJD97_020098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology