Basic Information
Locus ID:
SOLCI005652700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5754 | 10390 | 22856 | + | SOLCI005652700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 139,956.81 Da | 54.44 | 76.08 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 50 | 175 | 4.44236E-31 | - |
| CDD | cd12108 | Hr-like | 648 | 807 | 3.20058E-27 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1119 | 1162 | 3.84056E-16 | - |
| CDD | cd12108 | Hr-like | 309 | 438 | 5.57387E-17 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 307 | 440 | 7.7E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 53 | 177 | 6.1E-11 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 645 | 808 | 1.6E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1167 | 1224 | 2.5E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1119 | 1161 | 4.7E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 991 | 1066 | 6.0E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 985 | 1047 | 4.05E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1117 | 1174 | 3.53E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1057 | 1113 | 3.14E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 45 | 195 | 7.8E-33 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 456 | 4.0E-19 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1190 | 1230 | 2.9E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 641 | 870 | 4.1E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1113 | 1164 | 2.3E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 1120 | 1161 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 984 | 1053 | 24.437046 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1056 | 1119 | 29.338161 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1120 | 1162 | 11.51558 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_004235751.1 | zinc finger protein BRUTUS isoform X1 [Solanum lycopersicum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AYQ2 | Zinc finger protein BRUTUS OS=Solanum chilense OX=4083 GN=EJD97_020061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology