Basic Information
Locus ID:
SOLCI005633500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5722 | 38368 | 39393 | + | SOLCI005633500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 38,363.13 Da | 56.01 | 81.67 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 186 | 3.18206E-16 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 1.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 197 | 4.8E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 191 | 2.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 2.5E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 140 | 194 | 0.0018 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.784338 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015084949.1 | RING-H2 finger protein ATL52 [Solanum pennellii] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2B0D4 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_019996 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology