Basic Information
Locus ID:
SOLCI005628600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
UPL7
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5717 | 777 | 12623 | - | SOLCI005628600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 130,935.49 Da | 44.12 | 96.90 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 793 | 1158 | 2.78413E-145 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 847 | 1160 | 5.2E-91 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 792 | 1153 | 8.24E-108 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 794 | 1032 | 1.6E-73 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1034 | 1160 | 2.2E-38 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 918 | 997 | 1.6E-73 | - |
| SMART | SM00119 | hect_3 | 810 | 1160 | 5.2E-119 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 816 | 1160 | 85.027206 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53090.1 | ubiquitin-protein ligase 7. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_015088517.1 | E3 ubiquitin-protein ligase UPL7 [Solanum pennellii] | 0 |
| Q9SCQ2 | E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B617 | HECT-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_019978 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31990 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14385, gene_14386 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030776 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g160980 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg27271, Sbi_jg27272, Sbi_jg33259, Sbi_jg33260 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005674 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71343, Sgl74938 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006670, gene:ENSEOMG00000035810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019170, CQ.Regalona.r1.7BG0021780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274330 |
| Apiaceae | Apium graveolens | 1 | Ag10G02002 |
| Arecaceae | Cocos nucifera | 1 | scaffold117190G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710182 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1640.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G01060 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G53090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010078m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g09230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g066170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1527 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1580 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05410 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00002.v1.0, Dusal.0087s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2171 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000154, Pov_00004967 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1022, BH01.1161, CH01.1218 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0221390, gene-QOZ80_3BG0266530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0334560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063009 |
| Poaceae | Oryza coarctata | 2 | Oco05G020340, Oco06G021080 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g47949.1, LOC_Os03g47960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G115200, gene-BS78_01G123400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104667 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G008200, Chr12G029110 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G053200, Tel4E01G053300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG044190, gene_TRIDC4BG004610 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G285800.2, TraesCS4B02G027200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb217270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15768 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1909, evm.TU.LG14.209 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.947 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4260 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15982 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.922 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005793 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12589 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5794 |
| Salicaceae | Populus euphratica | 2 | populus_peu09043, populus_peu25725 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132629761, gene-LOC132629938, gene-LOC132629951 |
| Solanaceae | Solanum chilense | 1 | SOLCI005628600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031605 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4397 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2680 |