Basic Information
Locus ID:
SOLCI005609200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5693 | 1399 | 4300 | + | SOLCI005609200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 69,168.22 Da | 30.18 | 97.79 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 360 | 623 | 4.3053E-86 | - |
| Pfam | PF13855 | Leucine rich repeat | 132 | 175 | 5.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 62 | 5.0E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 79 | 127 | 3.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 358 | 617 | 6.6E-36 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 358 | 619 | 1.78E-58 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 208 | 7.83E-34 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 322 | 428 | 5.5E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 135 | 6.2E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 215 | 1.3E-19 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 429 | 636 | 4.8E-49 | - |
| SMART | SM00369 | LRR_typ_2 | 90 | 114 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 209 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 162 | 18.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 623 | 32.244614 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 360 | 382 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 0 |
| RefSeq | XP_015058501.1 | probable inactive receptor kinase At1g48480 [Solanum pennellii] | 0 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B0I8 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019915 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology