Basic Information
Locus ID:
SOLCI005589000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold566 | 25693 | 26208 | + | SOLCI005589000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 18,846.23 Da | 35.16 | 98.66 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 97 | 159 | 1.37178E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 97 | 158 | 4.4E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 20 | 82 | 1.7E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 160 | 2.66E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 90 | 166 | 8.0E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 89 | 1.6E-18 | - |
| SMART | SM00054 | efh_1 | 133 | 161 | 1.9E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 97 | 125 | 8.5E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 21 | 49 | 0.23 | IPR002048 |
| SMART | SM00054 | efh_1 | 57 | 85 | 0.64 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 93 | 128 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 17 | 52 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 53 | 88 | 10.217514 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 129 | 164 | 13.871811 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 142 | 154 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 30 | 42 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 106 | 118 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 66 | 78 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_004236098.1 | probable calcium-binding protein CML15 [Solanum lycopersicum] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C834 | Calcium-binding protein CML15 OS=Solanum chilense OX=4083 GN=EJD97_019841 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology