Basic Information
Locus ID:
SOLCI005585900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5653 | 20509 | 25534 | + | SOLCI005585900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 54,433.79 Da | 32.38 | 102.40 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 359 | 1.11092E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 1.1E-19 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 359 | 2.3E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 1.32E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 6.6E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 3.7E-23 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.116596 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 21.56426 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 9.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 9.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 9.1E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 492 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_004248576.1 | synaptotagmin-5-like [Solanum lycopersicum] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B2K7 | Synaptotagmin-4 OS=Solanum chilense OX=4083 GN=EJD97_019823 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology