Basic Information
Locus ID:
SOLCI005577300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5639 | 34283 | 41260 | + | SOLCI005577300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 52,312.38 Da | 36.21 | 88.23 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 190 | 441 | 1.27508E-95 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 84 | 160 | 2.4E-11 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 189 | 441 | 1.9E-58 | IPR001245 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 73 | 162 | 4.54E-21 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 187 | 441 | 2.7E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 181 | 263 | 1.6E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 264 | 454 | 1.1E-52 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 60 | 180 | 1.1E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 138 | 168 | 1800.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 105 | 134 | 2.6E-6 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 54 | 454 | 1.7E-117 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 105 | 137 | 13.124308 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 105 | 137 | 14.5057 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 184 | 448 | 45.050018 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 190 | 211 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 412 | 434 | 1.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 367 | 389 | 1.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 298 | 316 | 1.5E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 259 | 272 | 1.5E-12 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_010327322.1 | integrin-linked protein kinase 1-like isoform X1 [Solanum lycopersicum] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AZ82 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |