Basic Information
Locus ID:
SOLCI005573200
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5631 | 15517 | 27573 | - | SOLCI005573200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 186,842.77 Da | 44.98 | 68.43 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1501 | 1598 | 3.4E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1204 | 1629 | 2.47E-36 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1188 | 1624 | 5.2E-155 | - |
| SMART | SM00384 | AT_hook_2 | 246 | 258 | 0.77 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 717 | 729 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 829 | 841 | 68.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 39 | 51 | 6.4 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1306 | 1615 | 2.7E-71 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 374 | 384 | 89.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 118 | 130 | 390.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 791 | 805 | 440.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 311 | 323 | 49.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 685 | 697 | 360.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 669 | 681 | 420.0 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1325 | 1615 | 24.173952 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 884 | 929 | 8.668251 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1657 | 1676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 526 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_015069710.1 | uncharacterized protein LOC107014353 [Solanum pennellii] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B0S2 | Lysine-specific demethylase JMJ25-like OS=Solanum chilense OX=4083 GN=EJD97_019779 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology