Basic Information
Locus ID:
SOLCI005567900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold56283 | 8 | 1210 | + | SOLCI005567900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 35,450.46 Da | 37.27 | 58.45 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 83 | 314 | 2.72418E-115 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 20 | 59 | 2.47721E-15 | - |
| Pfam | PF00182 | Chitinase class I | 82 | 314 | 1.3E-133 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 21 | 59 | 6.8E-13 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 78 | 321 | 2.81E-107 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 21 | 65 | 8.38E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 166 | 223 | 3.8E-119 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 19 | 61 | 3.2E-16 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 87 | 320 | 3.8E-119 | - |
| SMART | SM00270 | ChitinBD_3 | 21 | 59 | 7.8E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 321 | 6.6E-121 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 19 | 61 | 10.587488 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 100 | 123 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 227 | 237 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 31 | 50 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 5.5E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 37 | 44 | 5.5E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 29 | 37 | 5.5E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015055806.1 | endochitinase 4 [Solanum pennellii] | 0 |
| P24091 | Endochitinase B OS=Nicotiana tabacum OX=4097 GN=CHN50 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2ADP6 | Chitin-binding type-1 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019772 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology