Basic Information
Locus ID:
SOLCI005557600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Serine threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5610 | 36420 | 46982 | - | SOLCI005557600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 57,303.47 Da | 48.72 | 73.35 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 263 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 508 | 1.25E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 215 | 511 | 1.2E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 196 | 3.2E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 68 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 146 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 371 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 429 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 314 | 14.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 14 | 516 | 5.6E-200 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 106 | 120 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 233 | 247 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 320 | 347 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 122 | 150 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 348 | 375 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 263 | 290 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 93 | 121 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 291 | 319 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 485 | 514 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 235 | 262 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 402 | 428 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 47 | 67 | 1.7E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 376 | 401 | 1.7E-160 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 464 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_004252372.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2 [Solanum lycopersicum] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B2T2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Solanum chilense OX=4083 GN=EJD97_019729 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology