Basic Information
Locus ID:
SOLCI005516500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5549 | 17555 | 19393 | + | SOLCI005516500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 62,947.39 Da | 34.17 | 98.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 43 | 1.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 49 | 4.71E-7 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 316 | 5.1E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 54 | 319 | 2.3E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 47 | 7.5E-7 | - |
| SMART | SM00256 | fbox_2 | 16 | 56 | 1.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 61 | 9.841896 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_049364712.1 | uncharacterized protein LOC125829541 [Solanum verrucosum] | 0 |
| TrEMBL | A0A6N2AZM3 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019584 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642694 |
| Solanaceae | Solanum chilense | 1 | SOLCI005516500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019930, gene-LOC114077224 |