halophFGD

Basic Information

Locus ID: SOLCI005500300

Species & Taxonomic ID: Solanum chilense & 4083

Genome Assembly: GCA_006013705.1

Description: RNase H family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold5522	4624	7275	+	SOLCI005500300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.11	88,345.05 Da	51.60	63.29	-1.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	350	456	1.1E-18	IPR025558
MobiDBLite	mobidb-lite	consensus disorder prediction	126	144	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	57	71	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	92	123	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	145	167	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	168	192	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	20	46	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	759	779	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	699	715	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	728	743	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	674	779	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	196	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	638	659	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_019067619.1	uncharacterized protein LOC109119500 [Solanum lycopersicum]	0
TrEMBL	A0A6N2B6Y8	DUF4283 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019532 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933