Basic Information
Locus ID:
SOLCI005499800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5521 | 7372 | 10535 | + | SOLCI005499800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 111,557.91 Da | 30.64 | 100.54 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 75 | 9.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 713 | 985 | 3.0E-48 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 494 | 546 | 9.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 554 | 594 | 1.5E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 80 | 137 | 6.7E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 709 | 989 | 5.53E-72 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 278 | 596 | 1.02E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 358 | 4.42E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 796 | 1013 | 1.4E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 711 | 795 | 6.4E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 337 | 634 | 1.1E-82 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 238 | 336 | 2.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 145 | 237 | 1.1E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 144 | 2.4E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 197 | 221 | 65.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 711 | 988 | 7.7E-38 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 341 | 365 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 437 | 461 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 557 | 580 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 293 | 317 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 101 | 124 | 100.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 711 | 995 | 39.099602 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 839 | 851 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 717 | 741 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1025 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_027767531.1 | MDIS1-interacting receptor like kinase 1 [Solanum pennellii] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AYV5 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019529 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology