Basic Information
Locus ID:
SOLCI005438600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5430 | 18782 | 25032 | + | SOLCI005438600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 83,670.75 Da | 50.17 | 65.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 484 | 762 | 1.57547E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 512 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 644 | 679 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 554 | 1.8E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 597 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 484 | 762 | 4.58E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 612 | 762 | 2.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 611 | 6.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 682 | 721 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 598 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 512 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 554 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 638 | 27.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 723 | 762 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 679 | 2.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 557 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 648 | 688 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 607 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 487 | 521 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 730 | 762 | 11.497408 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 730 | 762 | 12.212779 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 541 | 555 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 403 | - | - |
| Coils | Coil | Coil | 342 | 376 | - | - |
| Coils | Coil | Coil | 93 | 113 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_004247088.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Solanum lycopersicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B1X8 | LisH domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019355 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology