Basic Information
Locus ID:
SOLCI005389400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Fanconi Anaemia group E protein FANCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold537 | 162625 | 164229 | - | SOLCI005389400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 56,248.15 Da | 50.60 | 102.64 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11510 | Fanconi Anaemia group E protein FANCE | 403 | 490 | 6.6E-6 | IPR021025 |
| Gene3D | G3DSA:1.25.40.480 | - | 217 | 493 | 6.0E-53 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29560.1 | 0 | |
| RefSeq | XP_004242966.1 | uncharacterized protein LOC101265143 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2C8D7 | FA_FANCE domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_019152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15441 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258070 |
| Apiaceae | Apium graveolens | 2 | Ag11G04475, Ag6G02195 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709583 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2318.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G18887 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027131m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB03g011300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0870 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0898 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01170 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14380 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1221 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002909 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16999 |
| Poaceae | Echinochloa crus-galli | 1 | CH06.2137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543490, gene-QOZ80_6BG0496730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716390.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034588 |
| Poaceae | Oryza coarctata | 2 | Oco11G011590, Oco12G011710 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G173200 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G029300, Chr05G006960, Chr10G016820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G615600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050820, gene_TRIDC7BG043060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G363800.1.cds1, TraesCS7B02G264100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb385220_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30731 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.516 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13004 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12765 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16906 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014787 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4023 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8190 |
| Salicaceae | Populus euphratica | 1 | populus_peu37004 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616729 |
| Solanaceae | Solanum chilense | 1 | SOLCI005389400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024458 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6515 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1725 |