Basic Information
Locus ID:
SOLCI005348900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hydroxyproline-rich glycoprotein family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5314 | 21110 | 22180 | + | SOLCI005348900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 36,237.34 Da | 52.37 | 75.33 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51680.1 | hydroxyproline-rich glycoprotein family protein. | 0 |
| RefSeq | XP_004234156.2 | uncharacterized protein LOC101245523 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2B0T3 | Hydroxyproline-rich glycoprotein family protein OS=Solanum chilense OX=4083 GN=EJD97_019030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2377 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3150 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019046 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15404, Sbi_jg56215 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020295 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02122, Sgl07273 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001679, gene:ENSEOMG00000031145 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001710, CQ.Regalona.r1.3BG0001760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181600 |
| Apiaceae | Apium graveolens | 2 | Ag2G01936, Ag3G02300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700128 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.594.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21535 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014011m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g029070.2N, BniB05g059890.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2265 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012546, Pov_00040847 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G07862, Lb1G07867, Lb1G07874 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.5050, BH01.5299 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232060, gene-QOZ80_3BG0295880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0410800.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G001650, Oco06G001630 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G496700 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G038410, Chr07G005970, Chr12G001010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G528500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG069960 |
| Poaceae | Triticum aestivum | 3 | TraesCS4B02G320700.1, TraesCS4D02G317200.2 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3063, nbis-gene-4645 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2174, Zma_g4520 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1345, evm.TU.LG11.1555, evm.TU.LG14.636 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g01640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.198 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.120 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17664 |
| Salicaceae | Populus euphratica | 1 | populus_peu29179 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631772 |
| Solanaceae | Solanum chilense | 1 | SOLCI005348900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015198 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2491 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0280, TC06G1942 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00660.v3.1 |