Basic Information
Locus ID:
SOLCI005335600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5296 | 15150 | 15653 | + | SOLCI005335600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 18,336.49 Da | 21.39 | 92.87 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13499 | EF-hand domain pair | 87 | 148 | 4.6E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 11 | 73 | 2.8E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 149 | 6.68E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 154 | 7.6E-41 | - |
| SMART | SM00054 | efh_1 | 124 | 152 | 2.1E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 49 | 77 | 1.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 12 | 40 | 0.0033 | IPR002048 |
| SMART | SM00054 | efh_1 | 88 | 116 | 0.0011 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 45 | 80 | 8.906429 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 84 | 119 | 14.234451 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 8 | 43 | 14.122869 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 120 | 155 | 12.616518 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 58 | 70 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 133 | 145 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 21 | 33 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 97 | 109 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_004237205.1 | probable calcium-binding protein CML16 [Solanum lycopersicum] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2B2E7 | Calcium-binding protein CML16 OS=Solanum chilense OX=4083 GN=EJD97_018989 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology