Basic Information
Locus ID:
SOLCI005327100
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold5284 | 21131 | 27178 | + | SOLCI005327100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 43,873.97 Da | 37.91 | 75.44 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 49 | 119 | 4.7521E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 253 | 327 | 1.17687E-30 | - |
| CDD | cd12619 | RRM2_PUB1 | 133 | 207 | 5.70505E-50 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 115 | 3.8E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 321 | 1.5E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 2.6E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 46 | 210 | 4.96E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 337 | 9.37E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 125 | 223 | 1.9E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 41 | 124 | 1.9E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 231 | 332 | 9.8E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 254 | 323 | 1.1E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 48 | 117 | 6.7E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 133 | 206 | 1.4E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 48 | 117 | 19.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 133 | 206 | 0.015 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 327 | 15.476809 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 121 | 15.51092 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | 17.233515 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 250 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015059398.1 | oligouridylate-binding protein 1-like isoform X1 [Solanum pennellii] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2AZZ6 | Oligouridylate-binding protein 1-like OS=Solanum chilense OX=4083 GN=EJD97_018961 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology