Basic Information
Locus ID:
SOLCI005104000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4979 | 34332 | 35459 | + | SOLCI005104000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 43,184.47 Da | 40.81 | 94.51 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 46 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 77 | 4.19E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 61 | 1.0E-5 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 2.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 111 | 295 | 6.9E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 8.570165 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015064744.1 | F-box/kelch-repeat protein At3g23880 [Solanum pennellii] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B268 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_018328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1487 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132610589, gene-LOC132611646, gene-LOC132611647 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI002731400, SOLCI002982900, SOLCI003874500 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009918, gene-LOC107009922, gene-LOC107009962 ... |