Basic Information
Locus ID:
SOLCI005041900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4892 | 4962 | 9166 | - | SOLCI005041900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 69,772.19 Da | 32.87 | 97.35 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 7.8E-12 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 298 | 564 | 2.5E-40 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 194 | 1.4E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 277 | 565 | 6.34E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 583 | 4.3E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 265 | 371 | 5.3E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 208 | 2.2E-53 | IPR032675 |
| SMART | SM00220 | serkin_6 | 295 | 550 | 1.7E-32 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 118 | 140 | 7.581043 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 550 | 35.170353 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 301 | 323 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 414 | 426 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23950.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015080464.1 | probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Solanum pennellii] | 0 |
| Q0WVM4 | Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana OX=3702 GN=At2g23950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B9L4 | Protein kinase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_018138 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology