Basic Information
Locus ID:
SOLCI005040000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold489 | 229004 | 230914 | + | SOLCI005040000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 71,549.40 Da | 47.11 | 67.66 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 361 | 389 | 2.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 332 | 358 | 0.033 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 535 | 626 | 1.5E-32 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 267 | 423 | 1.5E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 332 | 358 | 0.0015 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 361 | 394 | 1.6E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 358 | 392 | 11.553267 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_015059710.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Solanum pennellii] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2CE86 | DYW_deaminase domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_018125 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology