Basic Information
Locus ID:
SOLCI005034700
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RmlD substrate binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4884 | 35134 | 36075 | + | SOLCI005034700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 34,792.46 Da | 19.81 | 98.72 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05239 | GDP_FS_SDR_e | 8 | 307 | 0.0 | IPR028614 |
| Pfam | PF01370 | NAD dependent epimerase/dehydratase family | 9 | 240 | 2.4E-74 | IPR001509 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 6 | 310 | 1.1E-77 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 10 | 293 | 6.7E-124 | - |
| Gene3D | G3DSA:3.90.25.10 | - | 171 | 307 | 6.7E-124 | - |
| Hamap | MF_00956 | GDP-L-fucose synthase [fcl]. | 6 | 308 | 50.424191 | IPR028614 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17890.2 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_015080358.1 | putative GDP-L-fucose synthase 2 [Solanum pennellii] | 0 |
| Q9LMU0 | Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=GER2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B5G0 | GDP-L-fucose synthase OS=Solanum chilense OX=4083 GN=EJD97_018100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4032 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3803 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014900 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24794, Sbi_jg8659 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19945 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42551, Sgl47305 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009848, gene:ENSEOMG00000032256 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017190, CQ.Regalona.r1.8BG0018390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264670 |
| Apiaceae | Apium graveolens | 1 | Ag5G01536 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005540 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707252, gene-LOC103709802 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3433.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G30933 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17890.1, AT1G73250.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008184m.g.v1.0, Thhalv10018855m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15980.v2.2, Sp5g28220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g051510.2N, BniB03g051550.2N, BniB04g032440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2646 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2789 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g13560, gene.Cymno05g14940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0366s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g39010, gene.Thate05g07120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-42 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.838 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26611 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2496, AH06.2497, BH06.2294, BH06.2296, CH06.2513 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0546800, gene-QOZ80_6AG0546810 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0742070.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_036545, gene-QYE76_037134, gene-QYE76_071831 ... |
| Poaceae | Oryza coarctata | 3 | Oco11G014140, Oco12G014310, Oco12G014320 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g43510.1, LOC_Os06g44260.1, LOC_Os06g44270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G211600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206369, Pt_Chr0401469 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G031140, Chr05G008840, Chr0G000340, Chr10G019280 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G609400, Tel7E01G862100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG070370, gene_TRIDC7BG064850 |
| Poaceae | Triticum aestivum | 5 | TraesCS6B02G375000.1.cds1, TraesCS6D02G323500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb388990_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40872, nbis-gene-9876, nbis-gene-9877 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30915, Zma_g30916, Zma_g33172 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1279, evm.TU.LG02.2604, evm.TU.LG11.1393 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.195, evm.TU.Scaffold_4_RagTag.2140 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30123 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15625, nbisL1-mrna-8770 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16622, nbisL1-mrna-4896 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000008l.465, evm.TU.utg000008l.1248 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000034, Maker00014590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16640, nbisL1-mrna-1943 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14580, nbisL1-mrna-9248 |
| Salicaceae | Populus euphratica | 2 | populus_peu05542, populus_peu12187 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602052, gene-LOC132602904 |
| Solanaceae | Solanum chilense | 1 | SOLCI005034700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024001 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12578_chr02_-, gene_7744 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0089, TC10G0937 |
| Zosteraceae | Zostera marina | 1 | Zosma02g23810.v3.1 |