Basic Information
Locus ID:
SOLCI005033400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4881 | 31737 | 32858 | - | SOLCI005033400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 41,192.23 Da | 59.00 | 82.35 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 162 | 205 | 9.83727E-20 | - |
| Pfam | PF13639 | Ring finger domain | 162 | 205 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 210 | 3.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 209 | 4.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 204 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 205 | 12.474524 | IPR001841 |
| Coils | Coil | Coil | 306 | 326 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004233335.1 | RING-H2 finger protein ATL46 [Solanum lycopersicum] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2B1M9 | RING-type domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_018094 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology