Basic Information
Locus ID:
SOLCI005025400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold4870 | 16756 | 17643 | - | SOLCI005025400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.06 | 32,457.17 Da | 37.78 | 84.92 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 93 | 135 | 7.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 141 | 5.96E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 141 | 2.5E-19 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 90 | 143 | 0.0035 | - |
| SMART | SM00184 | ring_2 | 94 | 134 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 135 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 275 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26800.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027770616.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Solanum pennellii] | 0 |
| Q9LQX2 | E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2B448 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_018066 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI005025400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114073828 |